Pesho Ivanov

@phdthesis{ivanov2023optimal,
  title = {Optimal Sequence Alignment using {A*}},
  author = {Ivanov, Petar},
  year = {2023},
  school = {ETH Zurich},
}

@article{koerkamp2022exact,
  title = {Exact global alignment using A* with seed heuristic and match pruning},
  author = {Groot Koerkamp, Ragnar and Ivanov, Pesho},
  journal = {Oxford Bioinformatics},
  year = {2024},
  publisher = {Cold Spring Harbor Laboratory},
  addendum1 = {\\\emph{Extends the seed heuristic with inexact seed matching and match chaining to align sequences with high error rates.}},
}

@inproceedings{ivanov2022fast,
  title = {Fast and {O}ptimal {S}equence-to-{G}raph {A}lignment {G}uided by {S}eeds},
  author = {Ivanov, Pesho and Bichsel, Benjamin and Vechev, Martin},
  booktitle = {RECOMB},
  year = {2022},
  addendum1 = {\\\emph{Improves upon the previous paper by a seed heuristic for A* to map long sequences in near-linear time with sequence length.}},
}

@inproceedings{ivanov2020astarix,
  title = {{AStarix}: {F}ast and {O}ptimal {S}equence-to-{G}raph {A}lignment},
  author = {Ivanov, Pesho and Bichsel, Benjamin and Mustafa, Harun and Kahles, Andr{\'e} and R{\"a}tsch, Gunnar and Vechev, Martin},
  booktitle = {RECOMB},
  year = {2020},
  addendum1 = {\\\emph{Suggests \A for optimal mapping, demonstrates that a trie index enables sub-linear mapping with reference size, introduces the sequence-to-graph mapper AStarix.}},
}